AMPA Receptor Kinetic Simulator
Step 1: Transition-Rate Parameters
M⁻¹·s⁻¹
s⁻¹
M⁻¹·s⁻¹
s⁻¹
M⁻¹·s⁻¹
s⁻¹
M⁻¹·s⁻¹
s⁻¹
s⁻¹
s⁻¹
s⁻¹
s⁻¹
s⁻¹
s⁻¹
s⁻¹
s⁻¹
M⁻¹·s⁻¹
s⁻¹
M⁻¹·s⁻¹
s⁻¹
M⁻¹·s⁻¹
s⁻¹
s⁻¹
s⁻¹
s⁻¹
s⁻¹
s⁻¹
s⁻¹
Step 2: Choose Simulation & Shared Parameters
Simulation Type:
Dose Response
Long Paired-Pulse Recovery
Short Paired-Pulse Recovery
Steady-State Inactivation
Train Simulation
Time Step (∆t) — simulation resolution:
s
ms
Single-channel Conductance — O2 state (2 subunits open):
S
pS
Single-channel Conductance — O3 state (3 subunits open):
S
pS
Single-channel Conductance — O4 state (4 subunits open):
S
pS
Step 3: Simulation-Specific Parameters
Pulse Duration (how long agonist is applied per concentration):
s
ms
Maximum Simulation Time:
s
ms
Agonist Pulse Start Time:
s
ms
Agonist Pulse End Time:
s
ms
Concentrations to Sweep(µM):
Duration of Conditioning (1st) Pulse:
s
ms
Duration of Test (2nd) Pulse:
s
ms
Agonist Concentration (applied to both 1st and 2nd pulses):
M
mM
Buffer Time (silence recorded after 2nd pulse ends):
s
ms
Inter-Pulse Intervals to Test (ms):
Duration of Conditioning (1st) Pulse:
s
ms
Duration of Test (2nd) Pulse:
s
ms
Agonist Concentration (applied to both 1st and 2nd pulses):
M
mM
Buffer Time (silence recorded after 2nd pulse ends):
s
ms
Inter-Pulse Intervals to Test (ms):
Pre-conditioning Duration (steady-state baseline agonist exposure):
s
ms
Test Pulse Duration:
s
ms
Test Pulse Agonist Concentration (fixed):
M
mM
Pre-conditioning Concentrations (nM):
Pulse Agonist Concentration (applied during each pulse in the train):
M
mM
Individual Pulse Duration (width of each agonist pulse):
s
ms
Stimulation Frequencies (Hz):
Number of Pulses per Train:
Pre-train Baseline Duration (silence before first pulse):
s
ms
Post-train Recording Duration (silence after last pulse):
s
ms
Run Simulation